diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..3b2dee3
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+.cvsignore
+*.patch
diff --git a/LICENSE.txt b/LICENSE.txt
new file mode 100644
index 0000000..d159169
--- /dev/null
+++ b/LICENSE.txt
@@ -0,0 +1,339 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The licenses for most software are designed to take away your
+freedom to share and change it.  By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users.  This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it.  (Some other Free Software Foundation software is covered by
+the GNU Lesser General Public License instead.)  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+this service if you wish), that you receive source code or can get it
+if you want it, that you can change the software or use pieces of it
+in new free programs; and that you know you can do these things.
+
+  To protect your rights, we need to make restrictions that forbid
+anyone to deny you these rights or to ask you to surrender the rights.
+These restrictions translate to certain responsibilities for you if you
+distribute copies of the software, or if you modify it.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must give the recipients all the rights that
+you have.  You must make sure that they, too, receive or can get the
+source code.  And you must show them these terms so they know their
+rights.
+
+  We protect your rights with two steps: (1) copyright the software, and
+(2) offer you this license which gives you legal permission to copy,
+distribute and/or modify the software.
+
+  Also, for each author's protection and ours, we want to make certain
+that everyone understands that there is no warranty for this free
+software.  If the software is modified by someone else and passed on, we
+want its recipients to know that what they have is not the original, so
+that any problems introduced by others will not reflect on the original
+authors' reputations.
+
+  Finally, any free program is threatened constantly by software
+patents.  We wish to avoid the danger that redistributors of a free
+program will individually obtain patent licenses, in effect making the
+program proprietary.  To prevent this, we have made it clear that any
+patent must be licensed for everyone's free use or not licensed at all.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                    GNU GENERAL PUBLIC LICENSE
+   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+  0. This License applies to any program or other work which contains
+a notice placed by the copyright holder saying it may be distributed
+under the terms of this General Public License.  The "Program", below,
+refers to any such program or work, and a "work based on the Program"
+means either the Program or any derivative work under copyright law:
+that is to say, a work containing the Program or a portion of it,
+either verbatim or with modifications and/or translated into another
+language.  (Hereinafter, translation is included without limitation in
+the term "modification".)  Each licensee is addressed as "you".
+
+Activities other than copying, distribution and modification are not
+covered by this License; they are outside its scope.  The act of
+running the Program is not restricted, and the output from the Program
+is covered only if its contents constitute a work based on the
+Program (independent of having been made by running the Program).
+Whether that is true depends on what the Program does.
+
+  1. You may copy and distribute verbatim copies of the Program's
+source code as you receive it, in any medium, provided that you
+conspicuously and appropriately publish on each copy an appropriate
+copyright notice and disclaimer of warranty; keep intact all the
+notices that refer to this License and to the absence of any warranty;
+and give any other recipients of the Program a copy of this License
+along with the Program.
+
+You may charge a fee for the physical act of transferring a copy, and
+you may at your option offer warranty protection in exchange for a fee.
+
+  2. You may modify your copy or copies of the Program or any portion
+of it, thus forming a work based on the Program, and copy and
+distribute such modifications or work under the terms of Section 1
+above, provided that you also meet all of these conditions:
+
+    a) You must cause the modified files to carry prominent notices
+    stating that you changed the files and the date of any change.
+
+    b) You must cause any work that you distribute or publish, that in
+    whole or in part contains or is derived from the Program or any
+    part thereof, to be licensed as a whole at no charge to all third
+    parties under the terms of this License.
+
+    c) If the modified program normally reads commands interactively
+    when run, you must cause it, when started running for such
+    interactive use in the most ordinary way, to print or display an
+    announcement including an appropriate copyright notice and a
+    notice that there is no warranty (or else, saying that you provide
+    a warranty) and that users may redistribute the program under
+    these conditions, and telling the user how to view a copy of this
+    License.  (Exception: if the Program itself is interactive but
+    does not normally print such an announcement, your work based on
+    the Program is not required to print an announcement.)
+
+These requirements apply to the modified work as a whole.  If
+identifiable sections of that work are not derived from the Program,
+and can be reasonably considered independent and separate works in
+themselves, then this License, and its terms, do not apply to those
+sections when you distribute them as separate works.  But when you
+distribute the same sections as part of a whole which is a work based
+on the Program, the distribution of the whole must be on the terms of
+this License, whose permissions for other licensees extend to the
+entire whole, and thus to each and every part regardless of who wrote it.
+
+Thus, it is not the intent of this section to claim rights or contest
+your rights to work written entirely by you; rather, the intent is to
+exercise the right to control the distribution of derivative or
+collective works based on the Program.
+
+In addition, mere aggregation of another work not based on the Program
+with the Program (or with a work based on the Program) on a volume of
+a storage or distribution medium does not bring the other work under
+the scope of this License.
+
+  3. You may copy and distribute the Program (or a work based on it,
+under Section 2) in object code or executable form under the terms of
+Sections 1 and 2 above provided that you also do one of the following:
+
+    a) Accompany it with the complete corresponding machine-readable
+    source code, which must be distributed under the terms of Sections
+    1 and 2 above on a medium customarily used for software interchange; or,
+
+    b) Accompany it with a written offer, valid for at least three
+    years, to give any third party, for a charge no more than your
+    cost of physically performing source distribution, a complete
+    machine-readable copy of the corresponding source code, to be
+    distributed under the terms of Sections 1 and 2 above on a medium
+    customarily used for software interchange; or,
+
+    c) Accompany it with the information you received as to the offer
+    to distribute corresponding source code.  (This alternative is
+    allowed only for noncommercial distribution and only if you
+    received the program in object code or executable form with such
+    an offer, in accord with Subsection b above.)
+
+The source code for a work means the preferred form of the work for
+making modifications to it.  For an executable work, complete source
+code means all the source code for all modules it contains, plus any
+associated interface definition files, plus the scripts used to
+control compilation and installation of the executable.  However, as a
+special exception, the source code distributed need not include
+anything that is normally distributed (in either source or binary
+form) with the major components (compiler, kernel, and so on) of the
+operating system on which the executable runs, unless that component
+itself accompanies the executable.
+
+If distribution of executable or object code is made by offering
+access to copy from a designated place, then offering equivalent
+access to copy the source code from the same place counts as
+distribution of the source code, even though third parties are not
+compelled to copy the source along with the object code.
+
+  4. You may not copy, modify, sublicense, or distribute the Program
+except as expressly provided under this License.  Any attempt
+otherwise to copy, modify, sublicense or distribute the Program is
+void, and will automatically terminate your rights under this License.
+However, parties who have received copies, or rights, from you under
+this License will not have their licenses terminated so long as such
+parties remain in full compliance.
+
+  5. You are not required to accept this License, since you have not
+signed it.  However, nothing else grants you permission to modify or
+distribute the Program or its derivative works.  These actions are
+prohibited by law if you do not accept this License.  Therefore, by
+modifying or distributing the Program (or any work based on the
+Program), you indicate your acceptance of this License to do so, and
+all its terms and conditions for copying, distributing or modifying
+the Program or works based on it.
+
+  6. Each time you redistribute the Program (or any work based on the
+Program), the recipient automatically receives a license from the
+original licensor to copy, distribute or modify the Program subject to
+these terms and conditions.  You may not impose any further
+restrictions on the recipients' exercise of the rights granted herein.
+You are not responsible for enforcing compliance by third parties to
+this License.
+
+  7. If, as a consequence of a court judgment or allegation of patent
+infringement or for any other reason (not limited to patent issues),
+conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot
+distribute so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you
+may not distribute the Program at all.  For example, if a patent
+license would not permit royalty-free redistribution of the Program by
+all those who receive copies directly or indirectly through you, then
+the only way you could satisfy both it and this License would be to
+refrain entirely from distribution of the Program.
+
+If any portion of this section is held invalid or unenforceable under
+any particular circumstance, the balance of the section is intended to
+apply and the section as a whole is intended to apply in other
+circumstances.
+
+It is not the purpose of this section to induce you to infringe any
+patents or other property right claims or to contest validity of any
+such claims; this section has the sole purpose of protecting the
+integrity of the free software distribution system, which is
+implemented by public license practices.  Many people have made
+generous contributions to the wide range of software distributed
+through that system in reliance on consistent application of that
+system; it is up to the author/donor to decide if he or she is willing
+to distribute software through any other system and a licensee cannot
+impose that choice.
+
+This section is intended to make thoroughly clear what is believed to
+be a consequence of the rest of this License.
+
+  8. If the distribution and/or use of the Program is restricted in
+certain countries either by patents or by copyrighted interfaces, the
+original copyright holder who places the Program under this License
+may add an explicit geographical distribution limitation excluding
+those countries, so that distribution is permitted only in or among
+countries not thus excluded.  In such case, this License incorporates
+the limitation as if written in the body of this License.
+
+  9. The Free Software Foundation may publish revised and/or new versions
+of the General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+Each version is given a distinguishing version number.  If the Program
+specifies a version number of this License which applies to it and "any
+later version", you have the option of following the terms and conditions
+either of that version or of any later version published by the Free
+Software Foundation.  If the Program does not specify a version number of
+this License, you may choose any version ever published by the Free Software
+Foundation.
+
+  10. If you wish to incorporate parts of the Program into other free
+programs whose distribution conditions are different, write to the author
+to ask for permission.  For software which is copyrighted by the Free
+Software Foundation, write to the Free Software Foundation; we sometimes
+make exceptions for this.  Our decision will be guided by the two goals
+of preserving the free status of all derivatives of our free software and
+of promoting the sharing and reuse of software generally.
+
+                            NO WARRANTY
+
+  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
+FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
+OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
+PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
+OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
+TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
+PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
+REPAIR OR CORRECTION.
+
+  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
+REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
+OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
+TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+    Gnomovision version 69, Copyright (C) year name of author
+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary.  Here is a sample; alter the names:
+
+  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+  `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+  <signature of Ty Coon>, 1 April 1989
+  Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs.  If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.
diff --git a/modules/graph_phyz/graph_phyz.module b/modules/graph_phyz/graph_phyz.module
index e1267ff..68d81c1 100644
--- a/modules/graph_phyz/graph_phyz.module
+++ b/modules/graph_phyz/graph_phyz.module
@@ -170,16 +170,16 @@ function template_preprocess_views_graphapi_style_graph_phyz(&$vars) {
 /**
  * Theme implementation, returns graph_phyz container as HTML.
  */
-function theme_graph_phyz_container($variables) {
-  return graph_phyz_container($variables['graph'], $variables['config']);
+function theme_graph_phyz_container($vars) {
+  return graph_phyz_container($vars['graph'], $vars['config']);
 }
 
 /**
  * Theme implementation, returns graph title as HTML.
  */
-function theme_graph_phyz_title($variables) {
-  $title = $variables['title'];
-  $data = $variables['data'];
+function theme_graph_phyz_title($vars) {
+  $title = $vars['title'];
+  $data = $vars['data'];
 
   $attributes = array(
     'class' => 'graphapi-title',
@@ -198,10 +198,10 @@ function theme_graph_phyz_title($variables) {
 /**
  * Theme implementation, returns graph node as HTML.
  */
-function theme_graph_phyz_node($variables) {
-  $dom_id = $variables['dom_id'];
-  $data = $variables['data'];
-  $config = $variables['config'];
+function theme_graph_phyz_node($vars) {
+  $dom_id = $vars['dom_id'];
+  $data = $vars['data'];
+  $config = $vars['config'];
 
   $attributes = array(
     'id' => $dom_id,
@@ -225,24 +225,24 @@ function theme_graph_phyz_node($variables) {
 /**
  * Theme implementation, returns graph edge as HTML.
  */
-function theme_graph_phyz_link($variables) {
+function theme_graph_phyz_link($vars) {
   $html = '<edge';
-  $html.= ' from="' . $variables['from'] . '"';
-  $html.= ' to="' . $variables['to'] . '"';
+  $html.= ' from="' . $vars['from'] . '"';
+  $html.= ' to="' . $vars['to'] . '"';
   if (isset($link['data']['type'])) {
-    $html.= ' type="' . $variables['data']['type'] . '"';
+    $html.= ' type="' . $vars['data']['type'] . '"';
   }
-  if (isset($variables['data']['color'])) {
-    $html.= ' color="' . $variables['data']['color'] . '"';
+  if (isset($vars['data']['color'])) {
+    $html.= ' color="' . $vars['data']['color'] . '"';
   }
-  if (isset($variables['data']['classes'])) {
-    $classes = $variables['data']['classes'];
+  if (isset($vars['data']['classes'])) {
+    $classes = $vars['data']['classes'];
     $class = join(" ", $classes);
     $html.= ' class="' . $class . '"';
   }
   $html.= '>';
-  if (isset($variables['title'])) {
-    $html.= '<a href="#" title="' . $variables['title'] . '">&curren;</a>';
+  if (isset($vars['title'])) {
+    $html.= '<a href="#" title="' . $vars['title'] . '">&curren;</a>';
   }
   $html.='</edge>';
 
@@ -257,9 +257,9 @@ function theme_graph_phyz_link($variables) {
  * @param $config
  *   Graph config array (see graph_phyz_default_config() for details).
  */
-function theme_graph_phyz_links($variables) {
-  $graph = $variables['graph'];
-  $config = $variables['config'];
+function theme_graph_phyz_links($vars) {
+  $graph = $vars['graph'];
+  $config = $vars['config'];
   $result = '<edges>';
   foreach ($graph as $from => $data) {
     foreach ($data['edges'] as $to => $link_data) {
diff --git a/modules/graphapi_demo/graphapi_demo.module b/modules/graphapi_demo/graphapi_demo.module
index e5cb8d7..ddf3ecd 100644
--- a/modules/graphapi_demo/graphapi_demo.module
+++ b/modules/graphapi_demo/graphapi_demo.module
@@ -106,19 +106,33 @@ function graphapi_demo_graph() {
   graphapi_add_sub_graph($graph, 'S', $sub);
   graphapi_set_node_title($graph, 'S', 'Subgraph if supported');
   graphapi_add_link($graph, 'graphapi', 'A');
-  graphapi_add_link($graph, 'A', 'S');
+  
+
+  $sub2 = _graphapi_demo_subgraph2();
+  graphapi_add_sub_graph($graph, 'S2', $sub2);
+  graphapi_set_node_title($graph, 'S2', 'Test Subgraph');
+  graphapi_add_link($graph, 'F', 'S'); // Subgraph_2.Node -> Subgraph_1
+  graphapi_add_link($graph, 'D', 'S'); // Node -> Subgraph_1
+  graphapi_add_link($graph, 'S', 'S2'); // Subgraph_1 -> Subgraph_2
+  graphapi_add_link($graph, 'G', 'C'); // Subgraph_2.Node -> Subgraph_1.Node
 
   return $graph;
 }
 
 function _graphapi_demo_subgraph() {
   $graph = graphapi_new_graph();
-
   graphapi_add_link($graph, 'A', 'B');
   graphapi_add_link($graph, 'B', 'C');
   return $graph;
 }
 
+function _graphapi_demo_subgraph2() {
+  $graph = graphapi_new_graph();
+  graphapi_add_link($graph, 'D', 'F');
+  graphapi_add_link($graph, 'E', 'G');
+  return $graph;
+}
+
 function _graphapi_demo_module_content($id, $project_id = NULL) {
   $text = '';
   if (is_null($project_id)) {
diff --git a/modules/graphviz/graphviz.info b/modules/graphviz/graphviz.info
index e091b3e..94c66db 100644
--- a/modules/graphviz/graphviz.info
+++ b/modules/graphviz/graphviz.info
@@ -3,5 +3,6 @@ description = A text implementation of the Graphviz data structure
 package = Visualization
 core = 7.x
 dependencies[] = graphapi
+dependencies[] = graphviz_filter
 
 files[] = graphviz.module
diff --git a/modules/graphviz/graphviz.module b/modules/graphviz/graphviz.module
index c944a71..6bfcb76 100644
--- a/modules/graphviz/graphviz.module
+++ b/modules/graphviz/graphviz.module
@@ -32,15 +32,6 @@ function graphviz_default_settings() {
 }
 
 /**
- * Implementations of theme_ENGINE_graphapi
- *
- * @param type $vars
- */
-function theme_graphviz_graphapi($vars) {
-  return theme('graphviz_container', $vars);
-}
-
-/**
  * Implements hook_graphapi_default_settings().
  *
  * @see graphviz_default_settings()
@@ -66,15 +57,73 @@ function graphviz_theme() {
         'config' => NULL,
       ),
     ),
+    'graphviz_links' => array(
+      'variables' => array(
+        'graph' => NULL,
+        'config' => NULL,
+      ),
+    ),
   );
 }
 
 /**
- * Implements theme_ENGINE_graphapi().
+ * Implementations of theme_ENGINE_graphapi
+ * 
+ * @param type $vars 
  */
-function theme_graphapi_graphviz_graphapi($vars) {
-  $config = $vars['config'];
-  return '<xmp>' . graphviz_to_dot($vars['graph']) . '</xmp>';
+function theme_graphviz_graphapi($vars) {
+  //$config = $vars['config'];
+  //return '<xmp>' . graphviz_to_dot($vars['graph']) . '</xmp>';
+  return theme('graphviz_container', $vars);
+}
+
+/**
+ * Theme implementation, returns graphviz container as HTML.
+ */
+function theme_graphviz_container($vars) {
+  //$dot = graphviz_to_dot($vars['graph']);
+  //return graphviz_filter_filterproc($dot);
+  return graphviz_container($vars['graph'], $vars['config']);
+}
+
+/**
+ * Renders the HTML for the given graph containing the image/svg and divs
+ *
+ * @param $graph
+ *   Graph array.
+ * @param $config
+ *   Graph config array (see graphapi_default_config() for details).
+ */
+function graphviz_container($graph, $config = array()) {
+  $config+= graphapi_default_config();
+  $config['id'] = 'graphapi-' . $config['id'];
+
+  $styles = array(
+    'width' => $config['width'] . 'px',
+    'height' => $config['height'] . 'px',
+    'background-color' => $config['background-color'],
+  );
+
+  $s = '';
+  foreach ($styles as $style => $value) {
+    $s .= "$style: $value; ";
+  }
+  $attributes = array(
+    'id' => $config['id'],
+    'class' => 'graphapi',
+    'style' => $s,
+  );
+  $a = drupal_attributes($attributes);
+  
+  $nl = "\n";
+  $result = '';
+  $result.= '<div ' . $a . '>';
+  $dot = graphviz_to_dot($graph);
+  $image = graphviz_filter_filterproc($dot);
+  $result.= $nl . $image;
+  $result .= $nl . '</div>';
+
+  return $result;
 }
 
 /**
@@ -90,21 +139,28 @@ function theme_graphapi_graphviz_graphapi($vars) {
  */
 function graphviz_to_dot($graph) {
   $dot = array();
-  $dot[] = "digraph {";
+  $dot[] = "digraph G {";
+  $dot[] = 'graph [fontsize=10 fontname="Verdana" compound=true];';
+  $dot[] = 'node [shape=record fontsize=10 fontname="Verdana"];';
   // TODO: make a proper result
-  //$tree = graphapi_get_graph_tree();
+  // $tree = graphapi_get_graph_tree();
+  // Print nodes
   foreach ($graph as $id => $node) {
     if (isset($node['_subgraph'])) {
       $dot[] = '  subgraph cluster_' . $id . ' {';
+      $dot[] = '    node [style=filled];';
+      $dot[] = '    color=blue;';
+      $subgraph_nodes = '   ';
       foreach ($node['_subgraph'] as $sub_id) {
-        $dot[] = '    ' . 'node_' . $sub_id;
+        $subgraph_nodes .= ' ' . 'node_' . $sub_id;
       }
+      $dot[] = $subgraph_nodes . ";";
     }
     else {
       $dot[] = '  ' . 'node_' . $id . ' [';
     }
 
-    $dot[] = '    label = "' . $node['data']['title'] . '"';
+    $dot[] = '    label = "' . $node['data']['title'] . '";';
 
     if (isset($node['_subgraph'])) {
       $dot[] = '  }';
@@ -113,10 +169,19 @@ function graphviz_to_dot($graph) {
       $dot[] = '  ]';
     }
   }
-
+  // Print links
   foreach ($graph as $id => $node) {
     foreach ($node['edges'] as $eid => $edge) {
-      $dot[] = "  node_$id -> node_$eid";
+      if (empty($graph[$eid]['_subgraph'])) { // node -> node
+        $dot[] = "  \"node_$id\" -> \"node_$eid\";";
+      } elseif (isset($graph[$eid]['_subgraph'])&& empty($graph[$id]['_subgraph'])) { // node -> subgraph
+        $tnode = $graph[$eid]['_subgraph'][0];
+        $dot[] = "  \"node_$id\" -> \"node_" . $tnode . "\" [lhead=cluster_" . $eid . "];";
+      } elseif (isset($graph[$eid]['_subgraph'])&& isset($graph[$id]['_subgraph'])) { // subgraph -> subgraph
+        $tnode = $graph[$eid]['_subgraph'][0];
+        $lnode = $graph[$id]['_subgraph'][0];
+        $dot[] = "  \"node_$lnode\" -> \"node_" . $tnode . "\" [lhead=cluster_" . $eid . " ltail=cluster_" . $id ."];";
+      }
     }
   }
   $dot[] = '}';
@@ -124,13 +189,6 @@ function graphviz_to_dot($graph) {
   return join("\n", $dot);
 }
 
-/**
- * Theme implementation, returns graphviz container as HTML.
- */
-function theme_graphviz_container($vars) {
-  return '<xmp>' . graphviz_to_dot($vars['graph']) . '</xmp>';
-}
-
 function graphviz_graphapi_node_properties() {
   return array(
     'background-color' => 'Background Color',
