<?php

/*
 * XXX MAKE BACKUPS BEFORE YOU RUN THIS!!!! 
 * This might cause issues with your install, so please back up your systems table before you run this script
 * 
 * I was able to find the culprit which was causing my issue though (the splash module)
 */
$dbhost = 'dbhost';
$dbuser = 'dbuser';
$dbpass = 'dbpass';
$dbname = 'dbname';

/* This is the path relative to drupal directory where the modules are you want to check */
$path_to_module_dir = 'sites/all/modules';
$path_to_drush = '/usr/local/bin/drush';

/* Set this to 0 and run, once you know what you're doing */
$DEBUG = 1;


$dbh = mysql_connect($dbhost, $dbuser, $dbpass);
if (!$dbh) {
      die('Could not connect: ' . mysql_error());
}
print("Connected successfully\n");

mysql_select_db($dbname);
$sth = mysql_query('SELECT * FROM system WHERE status = 1 AND filename LIKE "'.$path_to_modules_dir.'%"');
while($r = mysql_fetch_object($sth)) {
  printf("MODULE: %s => STATUS: %s\n", $r->name, $r->status);
  if(!$DEBUG) {
  mysql_query("UPDATE system SET status = 0 WHERE name='" . $r->name . "'");
  print `$path_to_drush info`;
  print "\n";
  mysql_query("UPDATE system SET status = 1 WHERE name='" . $r->name . "'");
  }
}

mysql_close($dbh);

?>