Getting "404 Not Found" on Omega8.cc's Aegir / Barracuda/0.9.5

Yes I am getting the same behavior after upgrading from Lenny to Squeeze and upgrading Barracuda. :(

Just starting to research it I will report back here with anything I discover. ;)

Edit: The behavior is sporadic.
It loads the Template.php perfectly!?!
All of the tpl.php files and the .info file are served up as a download.
css files all throw a 404 page error.
A few files load a WSOD.

I have uninstalled theme editor and reinstalled it.

I thought it was the PHP library upgrade or a security tweak that borked the theme editor.
But the fact that the template.php file loads perfectly fine when I click on it and saves without error pretty much destroys that assumption.

Off to IRC I go. ;)

I have fixed this issue - looking for some help in how to commit it.

Did anybody get this figured out? We are experiencing the same behavior.