Taxonomy terms not working as they should

I reported this problem in another issuse, but after reading it again, I think it is a different problem, hence the new issue.

The taxonomy terms seem to act wierd after I did an upgrade to Drupal 7.14 and a whole lot of other modules, after painfully reinstalling module after module, I discovered that the list of token that I can use for my actions/triggers changed from something nice and orderly, and easily searchable to a vast list of duplicate tokens.

A real mess. I am adding two screenshots of before and after, since its easier to see than describe it.