Content Access and Module Info problems after running simpletest patch on core files (even before enabling simpletest)

Notice: Undefined index: path in admin_menu_link_build() (line 65, 66 of /pathtosite/sites/all/modules/admin_menu/admin_menu.inc).

Notice: Undefined index: type in moduleinfo_get_pages() (line 132 of /pathtosite/sites/all/modules/moduleinfo/moduleinfo.module).

Notice: Trying to get property of non-object in moduleinfo_get_menu_name() (line 178 of /pathtosite/sites/all/modules/moduleinfo/moduleinfo.module).

Notice: Undefined index: userref_access_field_event_host in userref_access_node_grants() (line 148 of /pathtosite/sites/all/modules/userref_access/userref_access.module).

Also some others.

Environment:
MAMP
PHP 5.2.13
Drupal core 6.22
ModuleInfo 6.x-1.2
SimpleTest 6.x-2.11