Quite a few modules have been updated or had their patches committed. This is a diff on the make file to update some of those. The ones that still have patches I tested to make sure the patches still apply. The only one I am iffy on is VBO. It removes it's default view and replaces with admin views. It seems panopoly is using admin_views so it may be fine, but I haven't tested yet.
Here are the modules that have been updated: