Fields of message types disappear

Sorry, copied the wrong issue id. Here the correct one:
#1913702: Target field_target_nodes missing from 'node created' message

That is correct, the issue appeared in beta2. As reverting the message types in beta2 didn't help, I tried to update to the latest dev version.
Yesterday I just tried to restore the message types but didn't think about restoring commons_notify feature (it was too late at night probably). Did that now (in beta2) and it restored the message fields.
Still not sure though what caused the feature to be overwritten in the first place, as the message types have not been modified before the issue appeared.
I'll try to reproduce the problem.

I changed the issue version to beta2, that's more accurate and priority to normal as there is an easy workaround (if the feature has not been customized).

I did now the following workflow:

- Updated "broken" beta2 to dev version from yesterday
- Tested commenting, which resulted in a PHP error
- Reverted all features with drush:

# drush features-revert-all
The following modules will be reverted: commons_events, commons_like, commons_search, commons_search_core, commons_notify, commons_wikis, commons_polls, commons_site_homepage, commons_misc
Do you really want to continue? (y/n): y
Reverted menu_links.   [ok]
Do you really want to revert menu_links? (y/n): y
Reverted variable.  [ok]
Do you really want to revert variable? (y/n): y
Reverted menu_links.  [ok]
Do you really want to revert menu_links? (y/n): y
Reverted page_manager_handlers.  [ok]
Do you really want to revert page_manager_handlers? (y/n): y
Reverted message_type. [ok]
Do you really want to revert message_type? (y/n): y
Reverted variable. [ok]
Do you really want to revert variable? (y/n): y
Reverted variable. [ok]
Do you really want to revert variable? (y/n): y
Reverted page_manager_pages. [ok]
Do you really want to revert page_manager_pages? (y/n): y
Reverted variable. [ok]
Reverted page_manager_handlers.  [ok]
Do you really want to revert variable? (y/n): y
Do you really want to revert page_manager_handlers? (y/n): y

- Tested commenting, which still resulted in a PHP error
- Checked features and message types and realized that all features except commons_notify have been reverted.
- Tried to revert the feature commons_notify manually, but also that didn't work out even though i get the notification: "Reverted all message_type components for commons_notify."

Reverting commons_notify in beta2 was working without problems.

@jpontani
It is still overridden (see attachment)

@ezra-g
If I create a comment or a node I get the same error as mentioned above:

EntityMetadataWrapperException: Unknown data property field_target_nodes. in EntityStructureWrapper->getPropertyInfo() (line 339 of /[...]/profiles/commons/modules/contrib/entity/includes/entity.wrapper.inc).

Because field_target_nodes is being accessed in the functions commons_notify_node_insert and commons_notify_comment_insert without checking if it actually exists.
A small workaround to make this issue less critical could be to check if the field exists and if not simply skip it and eventually log it to ease debugging in case the fields are missing. That would't cause the commenting and node creation functionality to break if there is any issue with the message fields.