This should probably be set to multiple select to allow for selecting multiple terms to search from one vocab listing when using advanced search:
Around line 370ish, changing the 0 to a 1 will make the lists multiple select:
if ($vocabularies) {
foreach ($vocabularies as $vocabulary) {
$group .= _taxonomy_term_select($vocabulary->name, 'taxonomy', $edit['taxonomy'], $vocabulary->vid, '', 0, '<'. t('all categories') .'>');
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