Theme_editor isn't bringing in theme files if they are in a sub directory

Alot of the themes I have been making are more advanced than the usual few files. I have alternate style sheets, scripts, images and the like specific to each theme. For easier file management I put these files in sub directories and when adding the theme to the theme_editor module to be able to edit them through drupal instead of the file system, I have noticed that none of my files in my sub directories are being loaded.

For example:

themes/my_theme/ <-- Contains:
page.tpl.php
comment.tpl.php
node.tpl.php
box.tpl.php
block.tpl.php
style.css

all the above are loaded into the theme editor, but the following file contain in sub directories are not

themes/my_theme/stylesheets/ <-- Contains:
print.css
handheld.css
color1.css
color2.css

themes/my_theme/scripts/ <-- Contains:
ie_hover.htc
styleswitcher.php
ie_png.js

So could you make it so theme editor looks for sub directories and loads the files contained in them?