$closure generates code after closing body tag

Issue Summary

I am using LongTail ScanScout Premium Ads on jw flv player, and it requires all javascript code (swfobject_api code) to be before the closing body tag. However, it seems that in my page template, the use of 'print $closure' causes the javascript to be after the closing body tag.

Is there any way around this to solve this problem? Please help.