When creating a View in which the link title is output as a hyperlink with the link URL as its href value, (e.g., using [url] as your replacement pattern) special characters in URLs are escaped. This leads to a URL such as:

http://www.example.com/query1=value&query2=value&query3=value

Being changed to:

http://www.example.com/query1=value&query2=value&query3=value

Which breaks the link's functionality.

For now, this can be solved by creating a file called views-view-field--link-title.tpl.php in your theme directory, with the following code:

$text = $row->{$field->field_alias};
$path = $row->links_url;
$output = l($text, $path);
print $output;