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Issue #1524616 by jhodgdon: Improve efficiency of saving PHP branch documentation
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Issue #1524616 by jhodgdon: More query speedups, via adding another references table
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Issue #1524616 by jhodgdon: Query efficiency in api_shutdown function
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Allow more file parses during cron
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Issue #1524616 by jhodgdon: Make some code called by api_save_documentation() faster by combining multiple queries together
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Issue #1524534 by jhodgdon: make sure node deletes are done in batches
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Issue #1554736 by jhodgdon: One more test fix for full class hierarchy display
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Issue #1475496, 1554736 by jhodgdon: Change class hierarchy to show only ancestors on class page, with link to expanded hierarchy page showing siblings, children, and more
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Issue #1524534 by jhodgdon: Add update function to remove cruft left over from previous versions
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Issue #1524534 by jhodgdon: Additional testing for cruft removal