Lots of pageroute errors [#1057796]

Each of these pages is in the correct directory.
Page route is not reading them.
This only happens with the dev version.
The beta5 version works just fine.

Warning: include_once(profiles/openatrium/modules/contrib/content_profile/content_profile.pageroute.inc) [function.include-once]: failed to open stream: No such file or directory in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once() [function.include]: Failed opening 'profiles/openatrium/modules/contrib/content_profile/content_profile.pageroute.inc' for inclusion (include_path='.:/usr/share/php:/usr/share/pear') in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once(sites/all/modules/contrib-core-1/pageroute/pageroute.page_view.inc) [function.include-once]: failed to open stream: No such file or directory in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once() [function.include]: Failed opening 'sites/all/modules/contrib-core-1/pageroute/pageroute.page_view.inc' for inclusion (include_path='.:/usr/share/php:/usr/share/pear') in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once(sites/all/modules/contrib-core-1/pageroute/pageroute.page_add.inc) [function.include-once]: failed to open stream: No such file or directory in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once() [function.include]: Failed opening 'sites/all/modules/contrib-core-1/pageroute/pageroute.page_add.inc' for inclusion (include_path='.:/usr/share/php:/usr/share/pear') in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once(sites/all/modules/contrib-core-1/pageroute/pageroute.page_edit.inc) [function.include-once]: failed to open stream: No such file or directory in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once() [function.include]: Failed opening 'sites/all/modules/contrib-core-1/pageroute/pageroute.page_edit.inc' for inclusion (include_path='.:/usr/share/php:/usr/share/pear') in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once(sites/all/modules/contrib-core-1/pageroute/pageroute.page_useredit.inc) [function.include-once]: failed to open stream: No such file or directory in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671

Warning: include_once() [function.include]: Failed opening 'sites/all/modules/contrib-core-1/pageroute/pageroute.page_useredit.inc' for inclusion (include_path='.:/usr/share/php:/usr/share/pear') in /var/aegir/platforms/Modules_Directory/contrib-core-1/pageroute/pageroute.module on line 671