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Currently there is no option to switch taxonomy descriptions to be plain text, filtered, or full HTML. This is an issue when dealing with modules like Lexicon or just when trying to restrict HTML use at all times. This should have the same options as the Content Type's Comment Field management of text processing.
Comments
Comment #1
xjmI think this is a duplicate of #569434: Remove taxonomy term description field; provide description field for forum taxonomy. (If the description becomes a normal field, then the full range of field options becomes available.)
You could also add a custom text field to your vocabulary and use that in place of the existing description.