Steps to reproduce:

  1. Set admin theme to something other than the default (main) theme
  2. Go to /admin/config/content/ckeditor/edit/Full
  3. The theme path in the CSS fieldset will display the admin theme's path, even though in ckeditor.lib.inc, line 740, we are using variable_get('theme_default', $theme); which will pull from the default theme.

The attached patch fixes this.

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Patch attached