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Here is a patch that addresses a number of db calls. Apparently query placeholders cannot have "." in them.
This includes the patch in #2060077: Call to undefined function pager_query()
Comments
Comment #1
chertzogComment #2
ergonlogicFixed in 847d291b0a5 through 61a26c138c4.
Some apparently un-connected changes in the patch were not committed. See: #2210813: Follow-up from D7 DBTNG changes for follow-up.
Comment #3
ergonlogicFixed again in 529959b.