Appearantly Manualcrop has a change that makes it compatible with the latest Media 2.x-dev, but not compatible with the version that we are on. Obviously, I'd love to update to the latest Media per this issue:
#2159149: 'file_display' components are always overridden (update Media / File Entity)
But I just tried it and there are a bunch of problems. :-/
So, in the interim there is a patch to Manualcrop to make it compatible (again) with older version of Media:
https://drupal.org/comment/8616617#comment-8616617
I'll get this in right away so we're able to release even if we can't get the Media update done.
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dsnopekCommitted!