Fixed a bug with the logo not clearing with the header. Update to dev or 6.x-1.2 for this fix. It seems D7 wasn't really affected by this, but I did update it in the dev version for now so the CSS is the same between versions. I will wait to make a new release for D7 to match my D6 release.
This release fixes a bug in some configurations of PHP that was caused due to a short open PHP tag on one line in the page.tpl.php. I was able to recreate the error on my Windows machine and fixed the issue locally by changing them to a standard PHP open tag.