Duplicate columns and keys during update.php

Issue Summary

An error occurred. http://www2.automatingbusiness.net/update.php?id=12&op=do
Fatal error: Call to undefined function _project_release_get_api_vid() in /home1/automat7/public_html/support6/sites/all/modules/project/release/project_release.install on line 520

user warning: Duplicate column name 'version_api_tid' query: ALTER TABLE project_release_nodes ADD `version_api_tid` INT unsigned DEFAULT NULL in /home1/automat7/public_html/support6/includes/database.mysql-common.inc on line 306.

user warning: Multiple primary key defined query: ALTER TABLE project_issue_comments ADD PRIMARY KEY (cid) in /home1/automat7/public_html/support6/includes/database.mysql-common.inc on line 382.

Mysql db.

Note: I might have had a project module loaded long ago - maybe 2 or 3 years.